All functions

ari() print(<ari>)

Computes the adjusted Rand index and the confidence interval, comparing two classifications from a contingency table.

cc_crossclustering() print(<crossclustering>)

A partial clustering algorithm with automatic estimation of the number of clusters and identification of outliers

cc_get_cluster()

Provides the vector of clusters' ID to which each element belong to.

cc_test_ari()

A test for testing the null hypothesis of random agreement (i.e., adjusted Rand Index equal to 0) between two partitions.

cc_test_ari_permutation()

A permutation test for testing the null hypothesis of random agreement (i.e., adjusted Rand Index equal to 0) between two partitions.

chain_effect

A toy dataset for illustrating the chain effect.

consensus_cluster()

Get clusters which reach max consensus

is_zero()

Check for zero

nb_data

RNA-Seq dataset example

prune_zero_tail()

Prune tail made of zeros

reverse_table()

Reverse the process of create a contingency table

toy

A toy example matrix

twomoons

A famous shape data set containing two clusters with two moons shapes and outliers

worms

A famous shape data set containing two clusters with two worms shapes and outliers