Adjust P-values of a tidy_summary object
adjust_p(x, method)
# S3 method for tidy_summary
adjust_p(x, method = "BH")a tidy_summary object.
(chr, default = "BH") a valid method for
p.adjust
a tidy_summary object with the Ps adjusted
# \donttest{
library(Hmisc)
#>
#> Attaching package: ‘Hmisc’
#> The following objects are masked from ‘package:base’:
#>
#> format.pval, units
my_summary <- summary(Species ~ ., data = iris,
method = "reverse",
test = TRUE
)
tidy_summary(my_summary, prtest = "P") %>%
adjust_p()
#> ✔ P adjusted with BH method.
#> # A tibble: 4 × 5
#> ` ` `setosa \n(N=50)` `versicolor \n(N=50)` `virginica \n(N=50)`
#> <chr> <chr> <chr> <chr>
#> 1 Sepal.Length "4.800/5.000/5.200" "5.600/5.900/6.300" "6.225/6.500/6.900"
#> 2 Sepal.Width "3.200/3.400/3.675" "2.525/2.800/3.000" "2.800/3.000/3.175"
#> 3 Petal.Length "1.400/1.500/1.575" "4.000/4.350/4.600" "5.100/5.550/5.875"
#> 4 Petal.Width " 0.2/0.2/0.3" " 1.2/1.3/1.5" " 1.8/2.0/2.3"
#> # ℹ 1 more variable: `P-value` <chr>
# }